There is a HVAC relearn procedure I pasted it below
Actuator Recalibration
When replacing an air temperature, mode, recirculation actuator or the HVAC control assembly, the following calibration process needs to be performed:
Important: Do not adjust any controls on the HVAC control assembly during self-calibration. If interrupted, improper HVAC performance will result.
1) Turn ON the ignition with the engine OFF.
2) Turn the Temperature dial all the way to the right.
3) Turn the blower control dial all the way to the right.
4) Turn the mode position dial all the way to the left.
5) Simultaneously press and hold the A/C and Defrost buttons until the LED's start to flash.
6) Once the LED's stop flashing, calibration is complete.
that may solve your problem but you may have 1 or more of the actuators that control the blend doors go bad also.
Do you hear any Clicking noises from the dash when the system is operating?
I would try the relearn procedure afew times to see if it helps
Good luck!