Thanks for getting back to us, what do the tops of the pistons look like? are there any dents or chunks of carbon that came off when the valves hit the pistons?
If it was my car I would clean each piston carefully, without sanding or grinding away any material same with the block.
look for any dents in the pistons, then get a calibrated Industrial machinist straightedge and check each piston at top dead center with a feeler gauge set.
Write each measurement down for each cylinder the measurements should be exact. if the timing chain jumped a tooth or two causing this, and you drove the car like this, I would be concerned real concerned about bent rods.
If the chain let loose while cranking I wouldn't be so concerned, if the measurements are different cylinder to cylinder do not risk wasting your money.
Pull the rest of the engine and send the short block to a machine shop and have them inspect it.
Let the professionals whom inspected each rod and piston tell you it is all good or needs repair. again this is what I would do, the car is yours and your decision to make.
http://www.summitracing.com/parts/cbi-56429/overview/