Mystery solved. Finally back home tonight to spend some time with the car.
Invited my neighbor over to help me.
Through all the work I have been doing on the car (rebuild carb, removing of fenders, removing of inner fender wells, raising engine, replacing manifolds with headers, replacing motor and frame mounts, replacing starter, replacing plugs, replacing plug wires and I am sure I am missing something) the negative cable on the battery post came loose enough that when the engine was trying to start it created a short. The negative connection was tight enough though that when I pushed the key to Accessories or Ignition 1 all was good. But the connection on the negative side was not tight enough when pushing to Ignition 2 and starting the engine - thats when the short occurred. When I tried to start the engine my neighbor noticed a small puff of smoke come from the battery. Sitting in the car I would have never seen this. This is when all lights went out. Then he wiggled the negative cable and all lights came back on. Whew, that was easy.
Back to the new MSD. I used the two wires that were attached to the old ignition coil. One wires supplies 12 volts when in position ignition 1. One wires supplies 12 volts when in position ignition 2. You need both wires so at any time the MSD is only getting 12 volts. If you hook the MSD up directly to the battery the car will start but when you pull the key out attempting to shut down the engine the engine continues to run. Because the MSD is still getting the juice it needs by being connected to the battery. The MSD does not know to shut down.
Let me know if there are any questions.
Thanks . . . JIMB